Instalar o GeoNetwork no Tomcat 9.0

diegomrodrigues
(usa Ubuntu)

Enviado em 05/11/2023 - 14:32h

Colegas, boa tarde.

Estou realizando a instalação do GeoNetwork 4.4 (Stable version) no Debian 11 com o PostgreSQL.
Estou seguindo os passos da documentação (https://docs.geonetwork-opensource.org/4.4/install-guide/), mas até o momento não tive sucesso.

Seguem os passos realizados.

INSTALAR O TOMCAT

sudo apt install tomcat9 tomcat9-admin tomcat9-common tomcat9-docs 

sudo systemctl stop tomcat9.service

sudo systemctl start tomcat9.service

sudo systemctl status tomcat9.service 

Acessei http://localhost:8080/ e o site do Tomcat carregou.

INSTALAR O ELASTICSEARCH

wget -qO - https://artifacts.elastic.co/GPG-KEY-elasticsearch | sudo gpg --dearmor -o /usr/share/keyrings/elasticsearch-keyring.gpg

sudo apt-get install apt-transport-https

echo "deb [signed-by=/usr/share/keyrings/elasticsearch-keyring.gpg] https://artifacts.elastic.co/packages/8.x/apt stable main" | sudo tee /etc/apt/sources.list.d/elastic-8.x.list

sudo apt-get update && sudo apt-get install elasticsearch 

The generated password for the elastic built-in superuser is : QHuo00vyDc9X*W_UONOx

sudo systemctl daemon-reload

sudo systemctl enable elasticsearch.service

sudo systemctl start elasticsearch.service

sudo systemctl status elasticsearch.service

export ELASTIC_PASSWORD="QHuo00vyDc9X*W_UONOx"

sudo systemctl restart elasticsearch.service

sudo systemctl status elasticsearch.service 

A instalação terminou com sucesso.

INSTALAR O KIBANA

sudo apt-get install apt-transport-https

echo "deb [signed-by=/usr/share/keyrings/elasticsearch-keyring.gpg] https://artifacts.elastic.co/packages/8.x/apt stable main" | sudo tee /etc/apt/sources.list.d/elastic-8.x.list

sudo apt-get update && sudo apt-get install kibana



sudo /usr/share/elasticsearch/bin/elasticsearch-create-enrollment-token -s kibana 

eyJ2ZXIiOiI4LjEwLjQiLCJhZHIiOlsiMTAuMC4wLjYwOjkyMDAiXSwiZmdyIjoiYmQzOWNlZTg0NjNmYzBjNTU3ZGE1ZDcyNjE2NmQ5MGJiMzAzNDc4NDQ0MjZkMzBiZjdiZDEyYjQwNzUzZWE5YyIsImtleSI6Imt2TWtvSXNCRTBDa2ZwQ3JrbHlQOjFmM1dVWVBXUkdHaVJXQ1c2dDJEMGcifQ==

sudo /bin/systemctl daemon-reload

sudo /bin/systemctl enable kibana.service

sudo systemctl start kibana.service 

Acessei http://localhost:5601/ e digitei o código de segurança gerado com:

sudo /usr/share/kibana/bin/kibana-verification-code 

Alterei o arquivo /etc/kibana/kibana.yml com:

logging.root.level: debug

i18n.locale: "pt-br" 

Depois, reiniciei o Kibana.

sudo systemctl restart kibana.service

sudo systemctl status kibana.service 

INSTALAR O POSTGRESQL

 sudo apt install postgresql-13



sudo -u postgres psql

postgres=# ALTER USER postgres PASSWORD 'Gt5Y9os1B23x';

ALTER ROLE

postgres=# \q



sudo systemctl reload postgresql@13-main.service

sudo systemctl status postgresql@13-main.service 

INSTALAR O WAR

cd ~/Downloads

wget https://downloads.sourceforge.net/project/geonetwork/GeoNetwork_opensource/v3.10.2/geonetwork.war

sudo systemctl stop tomcat9.service

sudo cp geonetwork.war /var/lib/tomcat9/webapps/.

sudo systemctl start tomcat9.service

sudo systemctl status tomcat9.service 

Com os problemas, fiz o seguinte ajuste no arquivo:

sudo systemctl stop tomcat9.service

sudo nano /var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/jdbc.properties

jdbc.username=postgres

jdbc.password=Gt5Y9os1B23x

jdbc.database=/etc/tomcat9/Catalina/gn



sudo systemctl start tomcat9.service 

Mas meu GeoNetwork continua sem funcionar!
Arquivo de LOG abaixo.

Como posso ajustar as configurações para ficarem de forma adequada?

Obrigado!
Diego

-----------------------------------------------------
geonetwork.log
-----------------------------------------------------
[code]2023-11-04 22:17:41,737 ERROR [jeeves] - JeevesContextLoaderListener: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1481)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1226)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:543)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at jeeves.config.springutil.JeevesContextLoaderListener.contextInitialized(JeevesContextLoaderListener.java:81)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4716)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5177)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:706)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:946)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1792)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:118)
at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:757)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:426)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1520)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:309)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:936)
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:843)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1384)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1374)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:140)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:909)
at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardService.startInternal(StandardService.java:434)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:930)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:477)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
... 54 more
Caused by: java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:122)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsAfterInitialization(AbstractAutowireCapableBeanFactory.java:422)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
... 60 more
Caused by: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:735)
at org.apache.commons.dbcp2.BasicDataSource.createDataSource(BasicDataSource.java:605)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:809)
at org.fao.geonet.DatabaseMigration.migrateDatabase(DatabaseMigration.java:144)
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:120)
... 63 more
Caused by: org.h2.jdbc.JdbcSQLException: Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:332)
at org.h2.message.DbException.get(DbException.java:161)
at org.h2.store.FileLock.getExceptionFatal(FileLock.java:450)
at org.h2.store.FileLock.save(FileLock.java:223)
at org.h2.store.FileLock.lockFile(FileLock.java:347)
at org.h2.store.FileLock.lock(FileLock.java:133)
at org.h2.engine.Database.open(Database.java:575)
at org.h2.engine.Database.openDatabase(Database.java:236)
at org.h2.engine.Database.<init>(Database.java:231)
at org.h2.engine.Engine.openSession(Engine.java:56)
at org.h2.engine.Engine.openSession(Engine.java:160)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:139)
at org.h2.engine.Engine.createSession(Engine.java:122)
at org.h2.engine.Engine.createSession(Engine.java:28)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:323)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:105)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:90)
at org.h2.Driver.connect(Driver.java:73)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:53)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:355)
at org.apache.commons.dbcp2.BasicDataSource.validateConnectionFactory(BasicDataSource.java:116)
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:731)
... 67 more
Caused by: java.io.FileNotFoundException: /var/lib/tomcat9/gn.lock.db (Read-only file system)
at java.base/java.io.FileOutputStream.open0(Native Method)
at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:126)
at org.h2.store.fs.FilePathDisk.newOutputStream(FilePathDisk.java:278)
at org.h2.store.fs.FileUtils.newOutputStream(FileUtils.java:220)
at org.h2.store.FileLock.save(FileLock.java:211)
... 85 more
2023-11-04 22:17:41,741 FATAL [jeeves.engine] - Raised exception during init
2023-11-04 22:17:41,741 FATAL [jeeves.engine] - Exception : org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
2023-11-04 22:17:41,741 FATAL [jeeves.engine] - Message : Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
2023-11-04 22:17:41,742 FATAL [jeeves.engine] - Stack : org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1481)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1226)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:543)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at jeeves.config.springutil.JeevesContextLoaderListener.contextInitialized(JeevesContextLoaderListener.java:81)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4716)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5177)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:706)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:946)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1792)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:118)
at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:757)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:426)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1520)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:309)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:936)
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:843)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1384)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1374)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:140)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:909)
at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardService.startInternal(StandardService.java:434)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:930)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:477)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
... 54 more
Caused by: java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:122)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsAfterInitialization(AbstractAutowireCapableBeanFactory.java:422)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
... 60 more
Caused by: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:735)
at org.apache.commons.dbcp2.BasicDataSource.createDataSource(BasicDataSource.java:605)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:809)
at org.fao.geonet.DatabaseMigration.migrateDatabase(DatabaseMigration.java:144)
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:120)
... 63 more
Caused by: org.h2.jdbc.JdbcSQLException: Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:332)
at org.h2.message.DbException.get(DbException.java:161)
at org.h2.store.FileLock.getExceptionFatal(FileLock.java:450)
at org.h2.store.FileLock.save(FileLock.java:223)
at org.h2.store.FileLock.lockFile(FileLock.java:347)
at org.h2.store.FileLock.lock(FileLock.java:133)
at org.h2.engine.Database.open(Database.java:575)
at org.h2.engine.Database.openDatabase(Database.java:236)
at org.h2.engine.Database.<init>(Database.java:231)
at org.h2.engine.Engine.openSession(Engine.java:56)
at org.h2.engine.Engine.openSession(Engine.java:160)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:139)
at org.h2.engine.Engine.createSession(Engine.java:122)
at org.h2.engine.Engine.createSession(Engine.java:28)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:323)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:105)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:90)
at org.h2.Driver.connect(Driver.java:73)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:53)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:355)
at org.apache.commons.dbcp2.BasicDataSource.validateConnectionFactory(BasicDataSource.java:116)
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:731)
... 67 more
Caused by: java.io.FileNotFoundException: /var/lib/tomcat9/gn.lock.db (Read-only file system)
at java.base/java.io.FileOutputStream.open0(Native Method)
at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:126)
at org.h2.store.fs.FilePathDisk.newOutputStream(FilePathDisk.java:278)
at org.h2.store.fs.FileUtils.newOutputStream(FileUtils.java:220)
at org.h2.store.FileLock.save(FileLock.java:211)
... 85 more

2023-11-05 12:18:16,014 ERROR [jeeves] - JeevesContextLoaderListener: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1481)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1226)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:543)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at jeeves.config.springutil.JeevesContextLoaderListener.contextInitialized(JeevesContextLoaderListener.java:81)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4716)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5177)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:706)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:946)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1792)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:118)
at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:757)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:426)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1520)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:309)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:936)
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:843)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1384)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1374)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:140)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:909)
at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardService.startInternal(StandardService.java:434)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:930)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:477)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
... 54 more
Caused by: java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:122)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsAfterInitialization(AbstractAutowireCapableBeanFactory.java:422)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
... 60 more
Caused by: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:735)
at org.apache.commons.dbcp2.BasicDataSource.createDataSource(BasicDataSource.java:605)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:809)
at org.fao.geonet.DatabaseMigration.migrateDatabase(DatabaseMigration.java:144)
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:120)
... 63 more
Caused by: org.h2.jdbc.JdbcSQLException: Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:332)
at org.h2.message.DbException.get(DbException.java:161)
at org.h2.store.FileLock.getExceptionFatal(FileLock.java:450)
at org.h2.store.FileLock.save(FileLock.java:223)
at org.h2.store.FileLock.lockFile(FileLock.java:347)
at org.h2.store.FileLock.lock(FileLock.java:133)
at org.h2.engine.Database.open(Database.java:575)
at org.h2.engine.Database.openDatabase(Database.java:236)
at org.h2.engine.Database.<init>(Database.java:231)
at org.h2.engine.Engine.openSession(Engine.java:56)
at org.h2.engine.Engine.openSession(Engine.java:160)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:139)
at org.h2.engine.Engine.createSession(Engine.java:122)
at org.h2.engine.Engine.createSession(Engine.java:28)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:323)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:105)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:90)
at org.h2.Driver.connect(Driver.java:73)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:53)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:355)
at org.apache.commons.dbcp2.BasicDataSource.validateConnectionFactory(BasicDataSource.java:116)
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:731)
... 67 more
Caused by: java.io.FileNotFoundException: /var/lib/tomcat9/gn.lock.db (Read-only file system)
at java.base/java.io.FileOutputStream.open0(Native Method)
at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:126)
at org.h2.store.fs.FilePathDisk.newOutputStream(FilePathDisk.java:278)
at org.h2.store.fs.FileUtils.newOutputStream(FileUtils.java:220)
at org.h2.store.FileLock.save(FileLock.java:211)
... 85 more
2023-11-05 12:18:16,021 FATAL [jeeves.engine] - Raised exception during init
2023-11-05 12:18:16,021 FATAL [jeeves.engine] - Exception : org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
2023-11-05 12:18:16,021 FATAL [jeeves.engine] - Message : Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
2023-11-05 12:18:16,022 FATAL [jeeves.engine] - Stack : org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1481)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1226)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:543)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at jeeves.config.springutil.JeevesContextLoaderListener.contextInitialized(JeevesContextLoaderListener.java:81)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4716)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5177)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:706)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:946)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1792)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:118)
at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:757)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:426)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1520)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:309)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:936)
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:843)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1384)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1374)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:140)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:909)
at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardService.startInternal(StandardService.java:434)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:930)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:477)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
... 54 more
Caused by: java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:122)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsAfterInitialization(AbstractAutowireCapableBeanFactory.java:422)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
... 60 more
Caused by: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:735)
at org.apache.commons.dbcp2.BasicDataSource.createDataSource(BasicDataSource.java:605)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:809)
at org.fao.geonet.DatabaseMigration.migrateDatabase(DatabaseMigration.java:144)
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:120)
... 63 more
Caused by: org.h2.jdbc.JdbcSQLException: Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:332)
at org.h2.message.DbException.get(DbException.java:161)
at org.h2.store.FileLock.getExceptionFatal(FileLock.java:450)
at org.h2.store.FileLock.save(FileLock.java:223)
at org.h2.store.FileLock.lockFile(FileLock.java:347)
at org.h2.store.FileLock.lock(FileLock.java:133)
at org.h2.engine.Database.open(Database.java:575)
at org.h2.engine.Database.openDatabase(Database.java:236)
at org.h2.engine.Database.<init>(Database.java:231)
at org.h2.engine.Engine.openSession(Engine.java:56)
at org.h2.engine.Engine.openSession(Engine.java:160)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:139)
at org.h2.engine.Engine.createSession(Engine.java:122)
at org.h2.engine.Engine.createSession(Engine.java:28)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:323)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:105)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:90)
at org.h2.Driver.connect(Driver.java:73)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:53)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:355)
at org.apache.commons.dbcp2.BasicDataSource.validateConnectionFactory(BasicDataSource.java:116)
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:731)
... 67 more
Caused by: java.io.FileNotFoundException: /var/lib/tomcat9/gn.lock.db (Read-only file system)
at java.base/java.io.FileOutputStream.open0(Native Method)
at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:126)
at org.h2.store.fs.FilePathDisk.newOutputStream(FilePathDisk.java:278)
at org.h2.store.fs.FileUtils.newOutputStream(FileUtils.java:220)
at org.h2.store.FileLock.save(FileLock.java:211)
... 85 more

2023-11-05 13:32:41,980 ERROR [jeeves] - JeevesContextLoaderListener: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1481)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1226)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:543)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at jeeves.config.springutil.JeevesContextLoaderListener.contextInitialized(JeevesContextLoaderListener.java:81)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4716)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5177)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:706)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:946)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1792)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:118)
at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:757)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:426)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1520)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:309)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:936)
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:843)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1384)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1374)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:140)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:909)
at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardService.startInternal(StandardService.java:434)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:930)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:477)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
... 54 more
Caused by: java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:122)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsAfterInitialization(AbstractAutowireCapableBeanFactory.java:422)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
... 60 more
Caused by: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:735)
at org.apache.commons.dbcp2.BasicDataSource.createDataSource(BasicDataSource.java:605)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:809)
at org.fao.geonet.DatabaseMigration.migrateDatabase(DatabaseMigration.java:144)
at org.fao.geonet.DatabaseMigration.postProcessAfterInitialization(DatabaseMigration.java:120)
... 63 more
Caused by: org.h2.jdbc.JdbcSQLException: Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:332)
at org.h2.message.DbException.get(DbException.java:161)
at org.h2.store.FileLock.getExceptionFatal(FileLock.java:450)
at org.h2.store.FileLock.save(FileLock.java:223)
at org.h2.store.FileLock.lockFile(FileLock.java:347)
at org.h2.store.FileLock.lock(FileLock.java:133)
at org.h2.engine.Database.open(Database.java:575)
at org.h2.engine.Database.openDatabase(Database.java:236)
at org.h2.engine.Database.<init>(Database.java:231)
at org.h2.engine.Engine.openSession(Engine.java:56)
at org.h2.engine.Engine.openSession(Engine.java:160)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:139)
at org.h2.engine.Engine.createSession(Engine.java:122)
at org.h2.engine.Engine.createSession(Engine.java:28)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:323)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:105)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:90)
at org.h2.Driver.connect(Driver.java:73)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:53)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:355)
at org.apache.commons.dbcp2.BasicDataSource.validateConnectionFactory(BasicDataSource.java:116)
at org.apache.commons.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:731)
... 67 more
Caused by: java.io.FileNotFoundException: /var/lib/tomcat9/gn.lock.db (Read-only file system)
at java.base/java.io.FileOutputStream.open0(Native Method)
at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:126)
at org.h2.store.fs.FilePathDisk.newOutputStream(FilePathDisk.java:278)
at org.h2.store.fs.FileUtils.newOutputStream(FileUtils.java:220)
at org.h2.store.FileLock.save(FileLock.java:211)
... 85 more
2023-11-05 13:32:41,984 FATAL [jeeves.engine] - Raised exception during init
2023-11-05 13:32:41,984 FATAL [jeeves.engine] - Exception : org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create PoolableConnectionFactory (Error opening database: "Could not save properties /var/lib/tomcat9/gn.lock.db" [8000-174])
2023-11-05 13:32:41,984 FATAL [jeeves.engine] - Message : Error creating bean with name 'entityManagerFactory' defined in URL [jar:file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/lib/domain-3.10.2-0.jar!/config-spring-geonetwork.xml]: Cannot resolve reference to bean 'jdbcDataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jdbcDataSource' defined in URL [file:/var/lib/tomcat9/webapps/geonetwork/WEB-INF/config-db/defaultJdbcDataSource.xml]: Initialization of bean failed; nested exception is java.lang.RuntimeException: java.sql.SQLException: Cannot create Pool